Reverse dependencies for bio Latest version of the following gems require bio
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
16,329 Downloads
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
16,129 Downloads
bio-graphics 1.4
Library for visualizing genomic regions
15,877 Downloads
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
15,816 Downloads
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
15,791 Downloads
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
15,221 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
14,997 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
14,997 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
14,948 Downloads
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
14,695 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
14,446 Downloads
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
14,403 Downloads
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
14,041 Downloads
exodb 0.1.3
A library for exome sequencing data management
13,985 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
13,965 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
13,965 Downloads
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
13,733 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13,468 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13,468 Downloads
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
12,947 Downloads
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
12,943 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
12,453 Downloads
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
12,344 Downloads
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
12,145 Downloads
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,059 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
11,970 Downloads
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
10,686 Downloads
semin-egor 0.9.3
A new ESST generator
10,606 Downloads
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
10,584 Downloads
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10,553 Downloads